Search Results - "proteins"

Analysis of protein-protein interaction, transcriptional regulation and metabolic networks

Table of Contents: “…Contents: Biological networks: small networks dedicated to a specific task and genome-scale networks -- Protein interaction networks -- The yeast two-hybrid assay and its limitations -- Graph theory: degree distribution and correlation, characteristic path lengths and diameter, clustering coefficient, abundance of motifs and indicators of modularity -- Measures of node and edge centrality -- Affinity chromatography -- Hypergraphs -- Protein microarrays -- Transcription regulation networks -- Metabolic networks -- Small-world networks -- Flux balance analysis.…”
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Analysis of protein-protein interaction, transcriptional regulation and metabolic networks

Table of Contents: “…Contents: Biological networks: small networks dedicated to a specific task and genome-scale networks -- Protein interaction networks -- The yeast two-hybrid assay and its limitations -- Graph theory: degree distribution and correlation, characteristic path lengths and diameter, clustering coefficient, abundance of motifs and indicators of modularity -- Measures of node and edge centrality -- Affinity chromatography -- Hypergraphs -- Protein microarrays -- Transcription regulation networks -- Metabolic networks -- Small-world networks -- Flux balance analysis.…”
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Analysis of protein-protein interaction, transcriptional regulation and metabolic networks

Table of Contents: “…Contents: Biological networks: small networks dedicated to a specific task and genome-scale networks -- Protein interaction networks -- The yeast two-hybrid assay and its limitations -- Graph theory: degree distribution and correlation, characteristic path lengths and diameter, clustering coefficient, abundance of motifs and indicators of modularity -- Measures of node and edge centrality -- Affinity chromatography -- Hypergraphs -- Protein microarrays -- Transcription regulation networks -- Metabolic networks -- Small-world networks -- Flux balance analysis.…”
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Introduction to protein structure prediction methods and algorithms /

Subjects: “…Proteins Structure Mathematical models.…”
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Extracellular proteostasis an emerging field /

Table of Contents: “…Contents: Extracellular proteostasis -- Mechanisms of intracellular proteostasis -- Disease relevance and potential mechanisms of extracellular proteostasis -- Extracellular chaperones, mechanism and abundance -- Alpha-2-macroglobulin -- Fate of extracellular chaperone-client protein complexes in vivo -- Model of extracellular proteostasis -- Clusterin can also enter the cytosol (Motor neurone disease).…”
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Fast folding dynamics of small proteins placing limits on diffusional limits /

Table of Contents: “…Contents: Basic time scales and diffusional limits in protein folding -- Applying reaction rate theories to folding -- Kramers behavior and friction -- Internal friction of polymer chains -- Evidence for (or against) internal friction in protein folding -- Fast folding experiments and methodology -- Interpretations: internal time scales versus internal viscosity -- Limitations of the "diffusional limits" picture.…”
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Molecular dynamics simulations of protein dynamics, unfolding and misfolding

Table of Contents: “…Contents: Molecular mechanics force fields and starting structures -- Molecular dynamics (MD) simulations -- Native protein dynamics -- Protein unfolding -- Unfolding pathways of En-HD -- Protein unfolding and disease -- Objectives for MD simulations.…”
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Basic studies of protein folding and stability the folding of related protein families /

Table of Contents: “…Contents: The basics of protein folding studies: protein stability (thermodynamics) and protein folding kinetics -- The shape and interpretation of simple chevron plots -- How protein engineering phi value analysis can be used to investigate the structure of the transition state for protein folding -- How studies of the folding of related proteins can simplify the problem of investigating how proteins fold -- Comparison of the folding of complex, all-beta immunoglobulin-like proteins to the folding of simple 3-helix bundles.…”
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Fundamentals and principles for engineering proteolytic activity

Table of Contents: “…Contents: Protein engineering goals -- Applications of engineered proteins -- Strategies for engineering proteins -- Specific examples of redesigned proteases to understand structure/function relationships -- Engineered catalysis and molecular recognition in proteases.…”
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Mechanisms of protein folding reactions

Table of Contents: “…Contents: History of protein folding -- Origin of complexity in protein folding kinetics -- Slow reactions coupled to folding -- Prolyl isomerization -- Non-prolyl isomerization -- Association reactions -- Detection of folding intermediates -- Discrimination between different kinetic mechanisms -- Folding of multi-domain proteins.…”
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Flexible viruses structural disorder in viral proteins / by Uversky, Vladimir N.

Subjects: “…Viral proteins.…”
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Oncoproteins types and detection /

Table of Contents: “….] -- Finding for new site specific references for oncoprotein tumor markers : an example from thai context / Viroj Wiwanitkit -- Oncogenic activity of Epstein-Barr virus encoded latent membrane protein 1 in undifferentiated nasopharyngeal carcinoma / Thian-Sze Wong ... …”
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Proteolysis in the interstitial space / by Pizzo, Salvatore V., Lundblad, Roger L., Willis, Monte S.

Subjects: “…Proteins. 45904…”
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Human blood plasma proteins structure and function /

Table of Contents: “…Blood components -- Blood plasma proteins -- Domains, motifs, and repeats -- Protein families -- Posttranslational modifications -- Blood coagulation and fibrinolysis -- The complement system -- The immune system -- Enzymes -- Inhibitors -- Lipoproteins -- Hormones -- Cytokines and growth factors -- Transport and storage -- Additional proteins.…”
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Therapeutic Fc-fusion proteins /

Subjects: “…Proteins Therapeutic use.…”
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Mapping disordered proteins with single-molecule FRET

Table of Contents: “…Contents: Protein folding and folding landscapes -- Single-molecule FRET -- Protein collapse -- Polymer models to describe protein collapse -- The dynamics of unfolded and intrinsically disordered proteins -- Rouse models -- Internal friction.…”
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Cytoplasmic epigenetics proteins acting as genes /

Table of Contents: “…Contents: Prions (infectious proteins) include several self-propagating amyloids of S. cerevisiae and Podospora anserina and a self-activating enzyme of S. cerevisiae -- these non-chromosomal genetic elements are genes composed of protein, just as nucleic acids can catalyse enzymatic reactions -- the amyloid-based prions [PSI+] and [URE3] are diseases of yeast, but the [Het-s] prion of Podospora carries out a normal function for that organism, heterokaryon incompatibility.…”
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Respiration, reactive oxygen species and uncoupling proteins

Table of Contents: “…Contents: Reactive oxygen species production by mitochondria -- Mitochondrial free radicals and ageing in short-lived and long-lived species -- Topology and sites of ROS production in the electron transport chain -- Regulation of ROS production by mild uncoupling -- Uncoupling of mitochondria by uncoupling proteins -- Superoxide and reactive alkenal activation of UCPs -- A model for UCP activation -- Evidence that UCPs attenuate ROS.…”
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The biogenesis of E. coli inner membrane proteins

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G proteins and the biology of depression and antidepressants

Table of Contents: “…Contents: Depression -- Antidepressant drug targets -- G protein signaling -- GPCR -- Gs alpha lipid raft localization and antidepressant treatment -- Gs alpha Acylation status and lipid raft localization -- Gs alpha palmitoylation status and lipid raft localization -- Blood biomarkers for depression.…”
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