Search Results - "proteins"

Fuzzy protein theory for disordered proteins

Table of Contents: “…Contents: Intelligent decision-making mechanisms -- Structural disorder is maintained in protein assemblies -- Mechanisms and biological consequences of fuzziness -- Conformational diversity and context-dependence -- Fuzziness in cell differentiation and transcription factor evolution -- Material state and regulation of higher-order assemblies.…”
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Fuzzy protein theory for disordered proteins

Table of Contents: “…Contents: Intelligent decision-making mechanisms -- Structural disorder is maintained in protein assemblies -- Mechanisms and biological consequences of fuzziness -- Conformational diversity and context-dependence -- Fuzziness in cell differentiation and transcription factor evolution -- Material state and regulation of higher-order assemblies.…”
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Fuzzy protein theory for disordered proteins

Table of Contents: “…Contents: Intelligent decision-making mechanisms -- Structural disorder is maintained in protein assemblies -- Mechanisms and biological consequences of fuzziness -- Conformational diversity and context-dependence -- Fuzziness in cell differentiation and transcription factor evolution -- Material state and regulation of higher-order assemblies.…”
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The roles of intrinsic disorder in protein interaction networks

Table of Contents: “…Contents: Introducing the protein intrinsic disorder concept and intrinsically disordered proteins (IDPs) -- Structural peculiarities of IDPs -- Sequence peculiarities of IDPs -- Abundance of IDPs and their functions -- Intrinsic disorder in protein interaction networks -- Peculiarities of disorder-based binding and regulation -- Why are IDPs commonly involved in protein interactions?.…”
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Biogenesis of cellular iron-sulfur proteins part 1, structure, function, and assembly in mitochondria /

Table of Contents: “…Contents: Structure and functions of iron-sulfur (Fe/S) clusters and proteins -- Analysis of Fe/S proteins and their biogenesis -- Mechanisms of Fe/S protein assembly in mitochondria -- Mitochondrial "Fe/S diseases."…”
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Protein structure principles

Table of Contents: “…Contents: Primary protein structure -- X-ray diffraction and protein 3D structure -- Interactions within proteins -- Peptide bond constraints -- Ramachandran maps.…”
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Observed protein structures

Table of Contents: “…Contents: Protein secondary structures: alpha helix, beta-sheet, turns, and collagen -- Collagen properties -- The "protein fold" -- Protein arrangement according to type of fold, superfamily and family.…”
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Protein structure principles

Table of Contents: “…Contents: Primary protein structure -- X-ray diffraction and protein 3D structure -- Interactions within proteins -- Peptide bond constraints -- Ramachandran maps.…”
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Observed protein structures

Table of Contents: “…Contents: Protein secondary structures: alpha helix, beta-sheet, turns, and collagen -- Collagen properties -- The "protein fold" -- Protein arrangement according to type of fold, superfamily and family.…”
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How do proteins fold and why?

Table of Contents: “…Contents: Challenges to studying protein folding -- Methods based on hydrogen exchange (HX) -- Foldon units -- Step-wise assembly -- Building the native protein -- Error-dependent misfolding steps -- Role of chaperone molecules -- Other roles for Foldon behavior.…”
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Folding and design of helical repeat proteins

Table of Contents: “…Contents: Repeat proteins versus globular proteins -- Consensus design, the role of conserved hydrophobic residues -- Co-variation can modulate stability, but is not essential to specify a stable fold -- Structure and stability of the designed CTPR proteins -- The thermodynamic behavior of repeat proteins in terms of a 1D Ising model -- Amide H-exchange to study stability on a residue specific basis -- The structure of long TPRs -- Hypervariability defines the ligand binding site: a general result -- Functional TPR designs -- Useful designer proteins -- The awesome power of screens and selections.…”
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How do proteins fold and why?

Table of Contents: “…Contents: Challenges to studying protein folding -- Methods based on hydrogen exchange (HX) -- Foldon units -- Step-wise assembly -- Building the native protein -- Error-dependent misfolding steps -- Role of chaperone molecules -- Other roles for Foldon behavior.…”
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Folding and design of helical repeat proteins

Table of Contents: “…Contents: Repeat proteins versus globular proteins -- Consensus design, the role of conserved hydrophobic residues -- Co-variation can modulate stability, but is not essential to specify a stable fold -- Structure and stability of the designed CTPR proteins -- The thermodynamic behavior of repeat proteins in terms of a 1D Ising model -- Amide H-exchange to study stability on a residue specific basis -- The structure of long TPRs -- Hypervariability defines the ligand binding site: a general result -- Functional TPR designs -- Useful designer proteins -- The awesome power of screens and selections.…”
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How do proteins fold and why?

Table of Contents: “…Contents: Challenges to studying protein folding -- Methods based on hydrogen exchange (HX) -- Foldon units -- Step-wise assembly -- Building the native protein -- Error-dependent misfolding steps -- Role of chaperone molecules -- Other roles for Foldon behavior.…”
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Folding and design of helical repeat proteins

Table of Contents: “…Contents: Repeat proteins versus globular proteins -- Consensus design, the role of conserved hydrophobic residues -- Co-variation can modulate stability, but is not essential to specify a stable fold -- Structure and stability of the designed CTPR proteins -- The thermodynamic behavior of repeat proteins in terms of a 1D Ising model -- Amide H-exchange to study stability on a residue specific basis -- The structure of long TPRs -- Hypervariability defines the ligand binding site: a general result -- Functional TPR designs -- Useful designer proteins -- The awesome power of screens and selections.…”
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Mechanisms of protein folding reactions

Table of Contents: “…Contents: History of protein folding -- Origin of complexity in protein folding kinetics -- Slow reactions coupled to folding -- Prolyl isomerization -- Non-prolyl isomerization -- Association reactions -- Detection of folding intermediates -- Discrimination between different kinetic mechanisms -- Folding of multi-domain proteins.…”
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Mapping disordered proteins with single-molecule FRET

Table of Contents: “…Contents: Protein folding and folding landscapes -- Single-molecule FRET -- Protein collapse -- Polymer models to describe protein collapse -- The dynamics of unfolded and intrinsically disordered proteins -- Rouse models -- Internal friction.…”
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Mapping disordered proteins with single-molecule FRET

Table of Contents: “…Contents: Protein folding and folding landscapes -- Single-molecule FRET -- Protein collapse -- Polymer models to describe protein collapse -- The dynamics of unfolded and intrinsically disordered proteins -- Rouse models -- Internal friction.…”
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Mapping disordered proteins with single-molecule FRET

Table of Contents: “…Contents: Protein folding and folding landscapes -- Single-molecule FRET -- Protein collapse -- Polymer models to describe protein collapse -- The dynamics of unfolded and intrinsically disordered proteins -- Rouse models -- Internal friction.…”
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Biogenesis of cellular iron-sulfur proteins part 1, structure, function, and assembly in mitochondria /

Table of Contents: “…Contents: Structure and functions of iron-sulfur (Fe/S) clusters and proteins -- Analysis of Fe/S proteins and their biogenesis -- Mechanisms of Fe/S protein assembly in mitochondria -- Mitochondrial "Fe/S diseases."…”
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