Search Results - "chromatin"

Accessing and using ENCODE data

Table of Contents: “…Contents: A description of the ENCODE Consortium -- Experimental assays used by Consortium members -- Overview of genome-wide methods to study gene expression, chromatin, and transcription factors -- A summary of insights from ENCODE experiments -- How to access and download ENCODE data -- How to use ENCODE data in your own research.…”
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Series (Eukaryotic gene regulation)
Series (Introduction to human genetics)
Series (Using bioinformatics in the exploration of genetic diversity)
Series (Epigenetics, chromatin, transcription and cancer)

Genomics 101 an introduction to sequencing /

Table of Contents: “…Contents: Sanger sequencing -- Fluorescent Sanger sequencing -- Whole genome sequencing -- Next generation sequencing -- Multiplexing -- Whole exome sequencing -- Transcriptome sequencing -- Chromatin immunoprecipitation sequencing.…”
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Genomics 101 an introduction to sequencing /

Table of Contents: “…Contents: Sanger sequencing -- Fluorescent Sanger sequencing -- Whole genome sequencing -- Next generation sequencing -- Multiplexing -- Whole exome sequencing -- Transcriptome sequencing -- Chromatin immunoprecipitation sequencing.…”
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Comparing transcriptomes of distant organisms models of gene expression, part 2 of 2 /

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Accessing and using ENCODE data

Table of Contents: “…Contents: A description of the ENCODE Consortium -- Experimental assays used by Consortium members -- Overview of genome-wide methods to study gene expression, chromatin, and transcription factors -- A summary of insights from ENCODE experiments -- How to access and download ENCODE data -- How to use ENCODE data in your own research.…”
Get full text
Series (Eukaryotic gene regulation)
Series (Introduction to human genetics)
Series (Using bioinformatics in the exploration of genetic diversity)
Series (Epigenetics, chromatin, transcription and cancer)

Accessing and using ENCODE data

Table of Contents: “…Contents: A description of the ENCODE Consortium -- Experimental assays used by Consortium members -- Overview of genome-wide methods to study gene expression, chromatin, and transcription factors -- A summary of insights from ENCODE experiments -- How to access and download ENCODE data -- How to use ENCODE data in your own research.…”
Get full text
Series (Eukaryotic gene regulation)
Series (Introduction to human genetics)
Series (Using bioinformatics in the exploration of genetic diversity)
Series (Epigenetics, chromatin, transcription and cancer)

Comparing transcriptomes of distant organisms models of gene expression, part 2 of 2 /

Subjects: Get full text
Series

Comparing transcriptomes of distant organisms models of gene expression, part 2 of 2 /

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Series

Modeling the 3D conformation of genomes / by Tiana, G. (Guido), Giorgetti, Luca

Table of Contents: “…Cover; Half Title; Series Page; Title Page; Copyright Page; Contents; Preface; Editor; Contributors; 1: Job Dekker; 1.1 Introduction; 1.2 Chromosome Conformation Capture; 1.3 3C Variants to Obtain Genome-Scale and High-Resolution Chromatin Interaction Matrices; 1.4 Insights Obtained From Chromosome Interaction Data; 1.5 Dynamics and Cell-to-Cell Variation in Chromatin Interactions; 1.6 Polymer Models for Chromosome Folding; 1.7 Mechanisms of Chromosome Folding and Nuclear Organization; 1.8 Future Perspective; Acknowledgments; Part 1: First-Principles Models; 2: Cédric Vaillant and Daniel Jost…”
Taylor & Francis
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Plant genes, genomes, and genetics / by Grotewold, Erich, Chappell, Joseph, Kellogg, Elizabeth Anne

Table of Contents: “…The plant genetic material -- The genome landscape : plastic and dynamic -- Transposable elements -- Centromeres, telomeres and chromatin -- Organelle genomes -- RNA -- The plant RNA polymerases -- Making mRNAs : control of transcription by RNP-II -- Controlling nuclear transcription -- Control of transcription factor function -- Small RNAs -- Chromatin and gene expression -- RNA processing and transport -- Fate of RNA -- Translation of RNA -- Protein folding and transport -- Protein degradation.…”
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Protein networks and analysis of global gene expression

Table of Contents: “…Contents: A paradigm shift: from databases of protein sequences to protein interactions -- Technologies for measuring interactions -- Chromatin immunoprecipitation (ChIP) -- Yeast Two Hybrid (Y2H) technology -- Mass spectrometry based approaches -- Methods for querying protein networks with gene expression profiles -- Systematic validation of protein network models using gene deletions -- Cytoscape open-source software for network modeling and visualization -- Methods for network comparison across species -- Application to discover conserved protein complexes among the networks of yeast, worm, fly and Plasmodium -- Methods for querying protein networks to explain genetic (synthetic lethal) interactions -- Future directions: how network queries will enable systems biology.…”
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Protein networks and analysis of global gene expression

Table of Contents: “…Contents: A paradigm shift: from databases of protein sequences to protein interactions -- Technologies for measuring interactions -- Chromatin immunoprecipitation (ChIP) -- Yeast Two Hybrid (Y2H) technology -- Mass spectrometry based approaches -- Methods for querying protein networks with gene expression profiles -- Systematic validation of protein network models using gene deletions -- Cytoscape open-source software for network modeling and visualization -- Methods for network comparison across species -- Application to discover conserved protein complexes among the networks of yeast, worm, fly and Plasmodium -- Methods for querying protein networks to explain genetic (synthetic lethal) interactions -- Future directions: how network queries will enable systems biology.…”
Get full text
Series

Protein networks and analysis of global gene expression

Table of Contents: “…Contents: A paradigm shift: from databases of protein sequences to protein interactions -- Technologies for measuring interactions -- Chromatin immunoprecipitation (ChIP) -- Yeast Two Hybrid (Y2H) technology -- Mass spectrometry based approaches -- Methods for querying protein networks with gene expression profiles -- Systematic validation of protein network models using gene deletions -- Cytoscape open-source software for network modeling and visualization -- Methods for network comparison across species -- Application to discover conserved protein complexes among the networks of yeast, worm, fly and Plasmodium -- Methods for querying protein networks to explain genetic (synthetic lethal) interactions -- Future directions: how network queries will enable systems biology.…”
Get full text
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