Search Results - "yeast"
Suggested Topics within your search.
Suggested Topics within your search.
- Computational Biology
- Computational biology 2
- Gene Regulatory Networks 2
- Proteomics 2
- Systems Biology 2
- methods 2
- Algorithms 1
- Bioinformatics 1
- Biological models 1
- Data processing 1
- Databases, Protein 1
- Fungal Proteins 1
- Gene Expression Regulation 1
- Gene Expression Regulation, Fungal 1
- Genetic regulatory networks 1
- Genetics 1
- Genomics 1
- Metabolic Networks and Pathways 1
- Models, Genetic 1
- Protein Interaction Domains and Motifs 1
- Protein Interaction Mapping 1
- Protein Interaction Maps 1
- Protein protein interactions 1
- Protein-protein interactions 1
- Proteins 1
- Saccharomyces cerevisiae 1
- Systems biology 1
- Variation (Genetics) 1
- genetics 1
- metabolism 1
-
1
Computational methods in analysis of gene regulation and protein interactions
Published 2012Table of Contents: “…Contents: Finding regulatory motifs -- Finding motifs using target sets of promoters -- Problem definition -- The Amadeus motif finding algorithm -- Architecture, benchmark results and global analysis -- Finding transcriptional programs and their regulatory motifs -- Problem definition -- The Allegro software for recovering transcriptional program -- Results on yeast osmotic shock expression profiles -- Recovering microRNA binding motifs from 3' UTRs using stem cell expression profiles -- Discovering a novel motif pair in C. elegans -- Utilizing network information -- Using expression and protein interaction data -- Problem definition and the Matisse algorithm -- Demonstration of Matisse on yeast osmotic shock data -- Comparison of Matisse to other algorithms -- Demonstration of Matisse on human stem cell data -- The pluripotency network -- Using expression and protein interaction data with interaction confidence -- The Cezanne algorithm -- DNA damage response in yeast.…”
Get full text
Series
Electronic Video -
2
Protein networks and analysis of global gene expression
Published 2007Table of Contents: “…Contents: A paradigm shift: from databases of protein sequences to protein interactions -- Technologies for measuring interactions -- Chromatin immunoprecipitation (ChIP) -- Yeast Two Hybrid (Y2H) technology -- Mass spectrometry based approaches -- Methods for querying protein networks with gene expression profiles -- Systematic validation of protein network models using gene deletions -- Cytoscape open-source software for network modeling and visualization -- Methods for network comparison across species -- Application to discover conserved protein complexes among the networks of yeast, worm, fly and Plasmodium -- Methods for querying protein networks to explain genetic (synthetic lethal) interactions -- Future directions: how network queries will enable systems biology.…”
Get full text
Series
Electronic Video -
3
Analysis of protein-protein interaction, transcriptional regulation and metabolic networks
Published 2007Table of Contents: “…Contents: Biological networks: small networks dedicated to a specific task and genome-scale networks -- Protein interaction networks -- The yeast two-hybrid assay and its limitations -- Graph theory: degree distribution and correlation, characteristic path lengths and diameter, clustering coefficient, abundance of motifs and indicators of modularity -- Measures of node and edge centrality -- Affinity chromatography -- Hypergraphs -- Protein microarrays -- Transcription regulation networks -- Metabolic networks -- Small-world networks -- Flux balance analysis.…”
Get full text
Series
Electronic Video